Vibrio parahaemolyticus
Isolate HQ 5S/16S 9 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus S030
NCBI Strain Identifiers S030
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 99.86%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 40.0
5S Count 1
16S Count 1
23S Count 0
tRNA Count 9
Contig Count 483
N50 Contigs 24,210 bp
Longest Contig 88,285 bp
Scaffold Count 483
N50 Scaffolds 24,210 bp
Longest Scaffold 88,285 bp
Genome Size 5,092,265 bp
Protein Count 4,811
Coding Density 87.23%
GC Percentage 45.25%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name S030
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02338891
Country India
Date 2013-09-06
Genbank Assembly Accession GCA_000491575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 4,924
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 0
Species Taxid 670
SSU Count 1
Submitter State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology
Taxid 1394577
Total Gap Length 0
Translation Table 11
tRNA Count (total) 13
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWMF00000000.1