Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus S054
NCBI Strain Identifiers S054
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 98.47%
CheckM Contamination 1.45%
CheckM Strain Heterogeneity 11.76
5S Count 1
16S Count 0
23S Count 0
tRNA Count 9
Contig Count 684
N50 Contigs 14,422 bp
Longest Contig 73,277 bp
Scaffold Count 684
N50 Scaffolds 14,422 bp
Longest Scaffold 73,277 bp
Genome Size 5,180,948 bp
Protein Count 5,152
Coding Density 87.26%
GC Percentage 45.22%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name S054
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02338913
Country Thailand
Date 2013-09-06
Genbank Assembly Accession GCA_000491135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 5,252
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 0
Species Taxid 670
SSU Count 0
Submitter State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology
Taxid 1394599
Total Gap Length 0
Translation Table 11
tRNA Count (total) 14
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWLJ00000000.1