Vibrio parahaemolyticus
Isolate HQ 16S/23S 5 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio parahaemolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio parahaemolyticus; x__Vibrio parahaemolyticus S113
NCBI Strain Identifiers S113
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001558495.2)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 1.27%
CheckM Strain Heterogeneity 90.91
5S Count 0
16S Count 3
23S Count 5
tRNA Count 5
Contig Count 829
N50 Contigs 14,968 bp
Longest Contig 55,379 bp
Scaffold Count 829
N50 Scaffolds 14,968 bp
Longest Scaffold 55,379 bp
Genome Size 5,136,991 bp
Protein Count 5,115
Coding Density 87.41%
GC Percentage 45.18%
Ambiguous Bases N/A
GTDB representative GCA_001558495.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name S113
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02338962
Country India
Date 2013-09-06
Genbank Assembly Accession GCA_000490175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude None
Molecule Count N/A
CDS Count 5,148
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 0
Species Taxid 670
SSU Count 3
Submitter State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology
Taxid 1394648
Total Gap Length 0
Translation Table 11
tRNA Count (total) 8
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWJM00000000.1