Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3342-1
NCBI Strain Identifiers UMEA 3342-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 33
N50 Contigs 385,222 bp
Longest Contig 677,835 bp
Scaffold Count 13
N50 Scaffolds 3,852,119 bp
Longest Scaffold 3,852,119 bp
Genome Size 5,180,448 bp
Protein Count 4,780
Coding Density 87.07%
GC Percentage 50.48%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3342-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885958
Country Sweden
Date 2013-10-29
Genbank Assembly Accession GCA_000488155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,982
Refseq Category na
Seq Rel Date 2013/10/29
Spanned Gaps 20
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281246
Total Gap Length 30207
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYHM00000000.1