Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Litchfield; x__Salmonella enterica subsp. enterica serovar Litchfield str. CFSAN001076
NCBI Strain Identifiers CFSAN001076
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 98.53%
CheckM Contamination 1.8%
CheckM Strain Heterogeneity 95.45
5S Count 7
16S Count 3
23S Count 7
tRNA Count 19
Contig Count 98
N50 Contigs 96,467 bp
Longest Contig 273,983 bp
Scaffold Count 98
N50 Scaffolds 96,467 bp
Longest Scaffold 273,983 bp
Genome Size 4,720,275 bp
Protein Count 4,433
Coding Density 87.80%
GC Percentage 52.24%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM48785v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01816342
Country USA:WI
Date 2013-10-28
Genbank Assembly Accession GCA_000487855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source milk
Latitude Longitude None
Molecule Count N/A
CDS Count 4,722
Refseq Category na
Seq Rel Date 2013/10/28
Spanned Gaps 0
Species Taxid 28901
SSU Count 7
Submitter FDA
Taxid 1194150
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APAN00000000.1