Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Anatum; x__Salmonella enterica subsp. enterica serovar Anatum str. USDA 100
NCBI Strain Identifiers USDA 100;USDA_100
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 75.0
5S Count 3
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 308
N50 Contigs 72,830 bp
Longest Contig 321,115 bp
Scaffold Count 308
N50 Scaffolds 72,830 bp
Longest Scaffold 321,115 bp
Genome Size 4,743,328 bp
Protein Count 4,620
Coding Density 86.72%
GC Percentage 51.97%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM48759v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01805329
Country USA:FL
Date 2013-10-28
Genbank Assembly Accession GCA_000487595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,692
Refseq Category na
Seq Rel Date 2013/10/28
Spanned Gaps 0
Species Taxid 28901
SSU Count 4
Submitter FDA
Taxid 1124924
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APAA00000000.1