Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Derby; x__Salmonella enterica subsp. enterica serovar Derby str. 626
NCBI Strain Identifiers 626
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.74%
CheckM Strain Heterogeneity 33.33
5S Count 4
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 261
N50 Contigs 50,660 bp
Longest Contig 183,182 bp
Scaffold Count 261
N50 Scaffolds 50,660 bp
Longest Scaffold 183,182 bp
Genome Size 4,806,549 bp
Protein Count 4,751
Coding Density 87.36%
GC Percentage 52.02%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM48723v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01813422
Country USA:MN
Date 2013-10-28
Genbank Assembly Accession GCA_000487235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source filter from dairy farm
Latitude Longitude None
Molecule Count N/A
CDS Count 4,953
Refseq Category na
Seq Rel Date 2013/10/28
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 1124929
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOZH00000000.1