Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Oranienburg; x__Salmonella enterica subsp. enterica serovar Oranienburg str. 701
NCBI Strain Identifiers 701
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 50.0
5S Count 4
16S Count 1
23S Count 3
tRNA Count 18
Contig Count 55
N50 Contigs 262,243 bp
Longest Contig 605,891 bp
Scaffold Count 55
N50 Scaffolds 262,243 bp
Longest Scaffold 605,891 bp
Genome Size 4,608,405 bp
Protein Count 4,371
Coding Density 87.48%
GC Percentage 52.09%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM48679v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01805333
Country USA:NY
Date 2013-10-28
Genbank Assembly Accession GCA_000486795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cow milk sample from dairy farm
Latitude Longitude None
Molecule Count N/A
CDS Count 4,588
Refseq Category na
Seq Rel Date 2013/10/28
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 997334
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOYL00000000.1