Shewanella decolorationis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Shewanellaceae; g__Shewanella; s__Shewanella decolorationis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Shewanellaceae; g__Shewanella; s__Shewanella decolorationis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Shewanellaceae; g__Shewanella; s__Shewanella decolorationis; x__Shewanella decolorationis S12
NCBI Strain Identifiers S12
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 81
N50 Contigs 133,868 bp
Longest Contig 1,001,504 bp
Scaffold Count 77
N50 Scaffolds 155,538 bp
Longest Scaffold 1,001,504 bp
Genome Size 4,843,966 bp
Protein Count 4,233
Coding Density 86.54%
GC Percentage 47.09%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name SheDec2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469853
Country China: Guangzhou
Date 2013-10-28
Genbank Assembly Accession GCA_000485795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source activated sludge from a waste-water treatment plant
Latitude Longitude None
Molecule Count N/A
CDS Count 4,211
Refseq Category na
Seq Rel Date 2013/10/28
Spanned Gaps 4
Species Taxid 256839
SSU Count 1
Submitter Guangdong Institute of Microbiology
Taxid 1353536
Total Gap Length 517
Translation Table 11
tRNA Count (total) 86
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AXZL00000000.1