Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona; x__Salmonella enterica subsp. enterica serovar Agona str. SA-2
NCBI Strain Identifiers SA-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 11
23S Count 12
tRNA Count 20
Contig Count 62
N50 Contigs 156,994 bp
Longest Contig 297,878 bp
Scaffold Count 62
N50 Scaffolds 156,994 bp
Longest Scaffold 297,878 bp
Genome Size 4,767,154 bp
Protein Count 4,563
Coding Density 87.29%
GC Percentage 52.07%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM48381v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02415185
Country None
Date 2013-10-25
Genbank Assembly Accession GCA_000483815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,753
Refseq Category na
Seq Rel Date 2013/10/25
Spanned Gaps 0
Species Taxid 28901
SSU Count 14
Submitter FDA
Taxid 1003186
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYDW00000000.1