Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Atopobium; s__Atopobium fossor
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Atopobium; s__Atopobium fossor
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Atopobiaceae; g__Atopobium; s__Atopobium fossor; x__Atopobium fossor DSM 15642
NCBI Strain Identifiers DSM 15642
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 6
N50 Contigs 345,315 bp
Longest Contig 712,013 bp
Scaffold Count 4
N50 Scaffolds 1,085,272 bp
Longest Scaffold 1,085,272 bp
Genome Size 1,657,369 bp
Protein Count 1,486
Coding Density 91.13%
GC Percentage 45.36%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM48312v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440747
Country Australia
Date 2013-10-25
Genbank Assembly Accession GCA_000483125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,479
Refseq Category representative genome
Seq Rel Date 2013/10/25
Spanned Gaps 2
Species Taxid 39487
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1121023
Total Gap Length 785
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AXXR00000000.1