Actinokineospora inagensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Pseudonocardiaceae; g__Actinokineospora; s__Actinokineospora inagensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Actinokineospora; s__Actinokineospora inagensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Actinokineospora; s__Actinokineospora inagensis; x__Actinokineospora inagensis DSM 44258
NCBI Strain Identifiers DSM 44258
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 2.51%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 120
N50 Contigs 109,727 bp
Longest Contig 304,512 bp
Scaffold Count 98
N50 Scaffolds 116,641 bp
Longest Scaffold 423,085 bp
Genome Size 7,278,759 bp
Protein Count 6,385
Coding Density 87.70%
GC Percentage 70.23%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM48286v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441427
Country Japan
Date 2013-10-25
Genbank Assembly Accession GCA_000482865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,306
Refseq Category representative genome
Seq Rel Date 2013/10/25
Spanned Gaps 22
Species Taxid 103730
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1120935
Total Gap Length 1933
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AXWW00000000.1