Agrobacterium tumefaciens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium tumefaciens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Agrobacterium; s__Agrobacterium sp. UNC420CL41Cvi
NCBI Strain Identifiers UNC420CL41Cvi
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001541315.1)
Genome Characteristics
CheckM Completeness 99.86%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 19
N50 Contigs 381,435 bp
Longest Contig 744,351 bp
Scaffold Count 18
N50 Scaffolds 403,552 bp
Longest Scaffold 744,351 bp
Genome Size 4,966,114 bp
Protein Count 4,623
Coding Density 88.59%
GC Percentage 59.71%
Ambiguous Bases N/A
GTDB representative GCA_001541315.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM48228v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441443
Country None
Date 2013-10-30
Genbank Assembly Accession GCA_000482285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,678
Refseq Category na
Seq Rel Date 2013/10/30
Spanned Gaps 1
Species Taxid 1340437
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1340437
Total Gap Length 1640
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXUY00000000.1