Escherichia coli_D
Isolate MQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli SCD2
NCBI Strain Identifiers SCD2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 85.42%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 20.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 123
N50 Contigs 112,389 bp
Longest Contig 344,693 bp
Scaffold Count 123
N50 Scaffolds 112,389 bp
Longest Scaffold 344,693 bp
Genome Size 4,393,089 bp
Protein Count 4,160
Coding Density 88.30%
GC Percentage 50.73%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Escherichia coli SCD2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469991
Country India: Chandigarh
Date 2013-10-25
Genbank Assembly Accession GCA_000482065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source healthy human stool samples
Latitude Longitude None
Molecule Count N/A
CDS Count 4,521
Refseq Category na
Seq Rel Date 2013/10/25
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Institute of Microbial Technology
Taxid 1337385
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATKA00000000.1