Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa MSH10
NCBI Strain Identifiers MSH10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 5
23S Count 4
tRNA Count 20
Contig Count 18
N50 Contigs 776,334 bp
Longest Contig 1,285,412 bp
Scaffold Count 4
N50 Scaffolds 4,104,451 bp
Longest Scaffold 4,104,451 bp
Genome Size 6,504,006 bp
Protein Count 5,914
Coding Density 89.04%
GC Percentage 66.40%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Pseu_aeru_MSH10_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360659
Country USA
Date 2013-10-24
Genbank Assembly Accession GCA_000481965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Environmental (water)
Latitude Longitude None
Molecule Count N/A
CDS Count 6,069
Refseq Category na
Seq Rel Date 2013/10/24
Spanned Gaps 14
Species Taxid 287
SSU Count 5
Submitter Broad Institute
Taxid 1402487
Total Gap Length 41201
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXRP00000000.1