Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa BL20
NCBI Strain Identifiers BL20
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 31
N50 Contigs 1,698,925 bp
Longest Contig 1,824,146 bp
Scaffold Count 18
N50 Scaffolds 1,824,146 bp
Longest Scaffold 3,332,885 bp
Genome Size 6,740,642 bp
Protein Count 6,074
Coding Density 88.76%
GC Percentage 66.17%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Pseu_aeru_BL20_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02360733
Country USA
Date 2013-10-24
Genbank Assembly Accession GCA_000480745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Corneal Scraping
Latitude Longitude None
Molecule Count N/A
CDS Count 6,264
Refseq Category na
Seq Rel Date 2013/10/24
Spanned Gaps 13
Species Taxid 287
SSU Count 5
Submitter Broad Institute
Taxid 1402561
Total Gap Length 34980
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXPG00000000.1