Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis; x__Bordetella pertussis CHLA-15
NCBI Strain Identifiers CHLA-15
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.77%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 138
N50 Contigs 46,158 bp
Longest Contig 152,115 bp
Scaffold Count 138
N50 Scaffolds 46,158 bp
Longest Scaffold 152,115 bp
Genome Size 3,844,206 bp
Protein Count 3,705
Coding Density 89.66%
GC Percentage 67.89%
Ambiguous Bases N/A
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name gbp19v01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436199
Country None
Date 2013-12-13
Genbank Assembly Accession GCA_000479435.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,648
Refseq Category na
Seq Rel Date 2013/12/13
Spanned Gaps 0
Species Taxid 520
SSU Count 1
Submitter JCVI
Taxid 1331282
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXSD00000000.2