Latilactobacillus sakei
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Latilactobacillus; s__Latilactobacillus sakei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus sakei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus sakei; sb__Lactobacillus sakei subsp. sakei; x__Lactobacillus sakei subsp. sakei LS25
NCBI Strain Identifiers LS25
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002370355.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 38
N50 Contigs 111,457 bp
Longest Contig 228,953 bp
Scaffold Count 38
N50 Scaffolds 111,457 bp
Longest Scaffold 228,953 bp
Genome Size 2,030,219 bp
Protein Count 1,976
Coding Density 88.61%
GC Percentage 40.86%
Ambiguous Bases N/A
GTDB representative GCA_002370355.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM47862v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02178497
Country None
Date 2013-5-29
Genbank Assembly Accession GCA_000478625.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,942
Refseq Category na
Seq Rel Date 2013/05/29
Spanned Gaps 0
Species Taxid 1599
SSU Count 1
Submitter Nofima
Taxid 1285582
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASTI00000000.1