Amycolatopsis orientalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Pseudonocardiaceae; g__Amycolatopsis; s__Amycolatopsis orientalis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Amycolatopsis; s__Amycolatopsis orientalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Amycolatopsis; s__Amycolatopsis orientalis; x__Amycolatopsis orientalis DSM 40040 = KCTC 9412
NCBI Strain Identifiers KCTC 9412
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.99%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 99
N50 Contigs 233,061 bp
Longest Contig 756,371 bp
Scaffold Count 99
N50 Scaffolds 233,061 bp
Longest Scaffold 756,371 bp
Genome Size 9,062,454 bp
Protein Count 8,208
Coding Density 90.36%
GC Percentage 68.96%
Ambiguous Bases 18
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name AO9412_01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02142155
Country None
Date 2013-05-13
Genbank Assembly Accession GCA_000478275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 8,162
Refseq Category na
Seq Rel Date 2013/05/13
Spanned Gaps 0
Species Taxid 31958
SSU Count 1
Submitter KRIBB
Taxid 1125971
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ASJB00000000.1