Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. 34502
NCBI Strain Identifiers 34502
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.66%
CheckM Strain Heterogeneity 9.09
5S Count 5
16S Count 1
23S Count 5
tRNA Count 20
Contig Count 77
N50 Contigs 247,019 bp
Longest Contig 818,914 bp
Scaffold Count 77
N50 Scaffolds 247,019 bp
Longest Scaffold 818,914 bp
Genome Size 5,185,783 bp
Protein Count 4,995
Coding Density 87.72%
GC Percentage 52.02%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN001198_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01814034
Country None
Date 2013-10-17
Genbank Assembly Accession GCA_000474555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source swine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,320
Refseq Category na
Seq Rel Date 2013/10/17
Spanned Gaps 0
Species Taxid 28901
SSU Count 3
Submitter FDA
Taxid 1124971
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUQT00000000.1