Pseudophaeobacter arcticus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Pseudophaeobacter; s__Pseudophaeobacter arcticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Pseudophaeobacter; s__Pseudophaeobacter arcticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Pseudophaeobacter; s__Pseudophaeobacter arcticus; x__Pseudophaeobacter arcticus DSM 23566
NCBI Strain Identifiers DSM 23566
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 5
23S Count 5
tRNA Count 19
Contig Count 8
N50 Contigs 2,958,019 bp
Longest Contig 2,958,019 bp
Scaffold Count 6
N50 Scaffolds 4,215,469 bp
Longest Scaffold 4,215,469 bp
Genome Size 5,049,234 bp
Protein Count 4,813
Coding Density 87.82%
GC Percentage 59.27%
Ambiguous Bases 38
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM47320v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441118
Country Arctic Ocean
Date 2013-09-30
Genbank Assembly Accession GCA_000473205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 75.006667 N 169.993611 W
Molecule Count N/A
CDS Count 4,753
Refseq Category representative genome
Seq Rel Date 2013/09/30
Spanned Gaps 2
Species Taxid 385492
SSU Count 5
Submitter DOE Joint Genome Institute
Taxid 999550
Total Gap Length 200
Translation Table 11
tRNA Count (total) 58
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AXBF00000000.1