Bradyrhizobium pachyrhizi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Bradyrhizobium; s__Bradyrhizobium pachyrhizi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium elkanii; x__Bradyrhizobium elkanii USDA 3254
NCBI Strain Identifiers USDA 3254
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001189245.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 87
N50 Contigs 249,311 bp
Longest Contig 587,207 bp
Scaffold Count 85
N50 Scaffolds 288,434 bp
Longest Scaffold 602,152 bp
Genome Size 8,979,722 bp
Protein Count 8,473
Coding Density 83.86%
GC Percentage 63.78%
Ambiguous Bases 90
GTDB representative GCA_001189245.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM47276v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441448
Country USA
Date 2013-09-30
Genbank Assembly Accession GCA_000472765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 34.05125493 N 111.089437 W
Molecule Count N/A
CDS Count 8,442
Refseq Category na
Seq Rel Date 2013/09/30
Spanned Gaps 2
Species Taxid 29448
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1079479
Total Gap Length 1685
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXAH00000000.1