Lacticaseibacillus paracasei
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paracasei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; x__Lactobacillus casei group; s__Lactobacillus paracasei
NCBI Strain Identifiers 12A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000829035.1)
Genome Characteristics
CheckM Completeness 98.36%
CheckM Contamination 3.03%
CheckM Strain Heterogeneity 88.24
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 397
N50 Contigs 12,291 bp
Longest Contig 49,524 bp
Scaffold Count 397
N50 Scaffolds 12,291 bp
Longest Scaffold 49,524 bp
Genome Size 2,931,998 bp
Protein Count 3,076
Coding Density 85.37%
GC Percentage 46.29%
Ambiguous Bases 708
GTDB representative GCA_000829035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM47234v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441122
Country None
Date 2013-09-30
Genbank Assembly Accession GCA_000472345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,213
Refseq Category na
Seq Rel Date 2013/09/30
Spanned Gaps 0
Species Taxid 1597
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1051650
Total Gap Length 0
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWZQ00000000.1