Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__Dorea; s__Dorea sp000509125
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Lachnoclostridium; s__[Clostridium] scindens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Lachnoclostridium; s__[Clostridium] scindens; x__[Clostridium] scindens VE202-05
NCBI Strain Identifiers VE202-05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000509125.1)
Genome Characteristics
CheckM Completeness 94.13%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 102
N50 Contigs 72,302 bp
Longest Contig 177,061 bp
Scaffold Count 102
N50 Scaffolds 72,302 bp
Longest Scaffold 177,061 bp
Genome Size 3,912,387 bp
Protein Count 4,595
Coding Density 90.35%
GC Percentage 47.54%
Ambiguous Bases N/A
GTDB representative GCA_000509125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM47184v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00004073
Country None
Date 2013-09-16
Genbank Assembly Accession GCA_000471845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,853
Refseq Category na
Seq Rel Date 2013/09/16
Spanned Gaps 0
Species Taxid 29347
SSU Count 1
Submitter The University of Tokyo
Taxid 1232441
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BAHS00000000.1