Lactobacillus_F paraplantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus_F; s__Lactobacillus_F paraplantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum; x__Lactobacillus plantarum AY01
NCBI Strain Identifiers AY01
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 3.09%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 169
N50 Contigs 78,526 bp
Longest Contig 208,983 bp
Scaffold Count 169
N50 Scaffolds 78,526 bp
Longest Scaffold 208,983 bp
Genome Size 3,315,973 bp
Protein Count 3,166
Coding Density 83.42%
GC Percentage 43.72%
Ambiguous Bases 0
GTDB representative GCF_001435655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Velvet V1.2.03 of the Lactobacillus plantarum genome
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02250894
Country China: Shilin
Date 2013-9-20
Genbank Assembly Accession GCA_000469115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fresh ewes milk
Latitude Longitude None
Molecule Count 0
Protein Count 3,162
Refseq Category na
Seq Rel Date 2013/09/20
Spanned Gaps 0
Species Taxid 1590
SSU Count 2
Submitter Kunming University of Science and Technology
Taxid 1358413
Total Gap Length 0
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVAI00000000.1