Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae 1417
NCBI Strain Identifiers 1417
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 82
N50 Contigs 59,137 bp
Longest Contig 133,708 bp
Scaffold Count 82
N50 Scaffolds 59,137 bp
Longest Scaffold 133,708 bp
Genome Size 2,062,281 bp
Protein Count 2,095
Coding Density 85.88%
GC Percentage 39.60%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CGSSp1417
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02393760
Country Portugal
Date 2013-09-17
Genbank Assembly Accession GCA_000468395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,261
Refseq Category na
Seq Rel Date 2013/09/17
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter Center for Genomic Sciences
Taxid 1367484
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUYH00000000.1