Porphyromonas sp000467855
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas sp000467855
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas sp. oral taxon 278; x__Porphyromonas sp. oral taxon 278 str. W7784
NCBI Strain Identifiers W7784
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.81%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 120
N50 Contigs 37,618 bp
Longest Contig 106,805 bp
Scaffold Count 38
N50 Scaffolds 356,430 bp
Longest Scaffold 471,368 bp
Genome Size 2,158,216 bp
Protein Count 1,683
Coding Density 85.26%
GC Percentage 55.68%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM46785v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436880
Country Finland
Date 2013-9-16
Genbank Assembly Accession GCA_000467855.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dental plaque biofilm of the third molar
Latitude Longitude None
Molecule Count N/A
CDS Count 1,656
Refseq Category na
Seq Rel Date 2013/09/16
Spanned Gaps 82
Species Taxid 712437
SSU Count 2
Submitter Washington University
Taxid 1227272
Total Gap Length 8200
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWUX00000000.1