Porphyromonas gingivalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas gingivalis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas gingivalis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas gingivalis; x__Porphyromonas gingivalis F0568
NCBI Strain Identifiers F0568
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000010505.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 219
N50 Contigs 25,942 bp
Longest Contig 87,248 bp
Scaffold Count 154
N50 Scaffolds 32,910 bp
Longest Scaffold 168,213 bp
Genome Size 2,334,744 bp
Protein Count 2,046
Coding Density 86.70%
GC Percentage 48.40%
Ambiguous Bases N/A
GTDB representative GCA_000010505.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM46779v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436723
Country USA
Date 2013-9-16
Genbank Assembly Accession GCA_000467795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source subgingival plaque biofilm
Latitude Longitude None
Molecule Count N/A
CDS Count 2,066
Refseq Category na
Seq Rel Date 2013/09/16
Spanned Gaps 65
Species Taxid 837
SSU Count 1
Submitter Washington University
Taxid 1227269
Total Gap Length 6500
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWUU00000000.1