Cronobacter sakazakii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii; x__Cronobacter sakazakii 8399
NCBI Strain Identifiers 8399
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000982825.1)
Genome Characteristics
CheckM Completeness 99.99%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 16.67
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 58
N50 Contigs 194,832 bp
Longest Contig 565,148 bp
Scaffold Count 32
N50 Scaffolds 632,866 bp
Longest Scaffold 1,052,682 bp
Genome Size 4,654,803 bp
Protein Count 4,343
Coding Density 87.45%
GC Percentage 56.66%
Ambiguous Bases N/A
GTDB representative GCA_000982825.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CsakCC4_8399_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470723
Country Israel
Date 2013-9-16
Genbank Assembly Accession GCA_000467775.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cerebral spinal fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 4,464
Refseq Category na
Seq Rel Date 2013/09/16
Spanned Gaps 26
Species Taxid 28141
SSU Count 7
Submitter Nottingham Trent University, UK
Taxid 1397689
Total Gap Length 481
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWSP00000000.1