Pseudomonas_E asplenii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E asplenii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fuscovaginae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas fuscovaginae; x__Pseudomonas fuscovaginae DAR 77795
NCBI Strain Identifiers DAR77795
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900105475.1)
Genome Characteristics
CheckM Completeness 91.28%
CheckM Contamination 1.07%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 482
N50 Contigs 39,590 bp
Longest Contig 142,282 bp
Scaffold Count 482
N50 Scaffolds 39,590 bp
Longest Scaffold 142,282 bp
Genome Size 6,252,301 bp
Protein Count 6,932
Coding Density 86.76%
GC Percentage 61.30%
Ambiguous Bases N/A
GTDB representative GCA_900105475.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM46700v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00000760
Country None
Date 2013-09-13
Genbank Assembly Accession GCA_000467005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,944
Refseq Category na
Seq Rel Date 2013/09/13
Spanned Gaps 0
Species Taxid 50340
SSU Count 1
Submitter Charles Sturt University
Taxid 1246628
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BATD00000000.1