Limosilactobacillus fermentum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus fermentum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum; x__Lactobacillus fermentum 3872
NCBI Strain Identifiers 3872
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000159215.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 50.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 2
N50 Contigs 2,297,851 bp
Longest Contig 2,297,851 bp
Scaffold Count 2
N50 Scaffolds 2,297,851 bp
Longest Scaffold 2,297,851 bp
Genome Size 2,330,492 bp
Protein Count 2,337
Coding Density 85.52%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_000159215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM46678v3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02314197
Country Russia
Date 2015-06-17
Genbank Assembly Accession GCA_000466785.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source milk from female
Latitude Longitude None
Molecule Count 2
CDS Count 2,352
Refseq Category na
Seq Rel Date 2015/06/17
Spanned Gaps 0
Species Taxid 1613
SSU Count 5
Submitter Kingston University
Taxid 1381124
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None