Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. EGD-AK9
NCBI Strain Identifiers EGD-AK9
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.27%
CheckM Contamination 2.04%
CheckM Strain Heterogeneity 15.79
5S Count 2
16S Count 2
23S Count 4
tRNA Count 20
Contig Count 1,015
N50 Contigs 11,837 bp
Longest Contig 97,583 bp
Scaffold Count 1,015
N50 Scaffolds 11,837 bp
Longest Scaffold 97,583 bp
Genome Size 5,102,044 bp
Protein Count 5,508
Coding Density 87.62%
GC Percentage 65.59%
Ambiguous Bases 71
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Pseudomonas sp. EGD-AK9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470627
Country India
Date 2013-9-12
Genbank Assembly Accession GCA_000465935.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Indian agricultural soil
Latitude Longitude None
Molecule Count N/A
CDS Count 5,506
Refseq Category na
Seq Rel Date 2013/09/12
Spanned Gaps 0
Species Taxid 1386078
SSU Count 2
Submitter National Environmental Engineering Research Institute
Taxid 1386078
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVOF00000000.1