GCF_000465555.2
Pantoea dispersa
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea dispersa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea dispersa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea dispersa; x__Pantoea dispersa EGD-AAK13
NCBI Strain Identifiers EGD-AAK13
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 39
N50 Contigs 237,706 bp
Longest Contig 552,709 bp
Scaffold Count 39
N50 Scaffolds 237,706 bp
Longest Scaffold 552,709 bp
Genome Size 4,764,584 bp
Protein Count 4,377
Coding Density 88.29%
GC Percentage 57.81%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name GS De Novo Assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469686
Country India: MS
Date 2013-9-11
Genbank Assembly Accession GCA_000465555.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vegetable market soil
Latitude Longitude None
Molecule Count 0
Protein Count 4,349
Refseq Category representative genome
Seq Rel Date 2013/09/11
Spanned Gaps 0
Species Taxid 59814
SSU Count 1
Submitter National Environmental Engineering Research Institute-CSIR
Taxid 1358411
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVSS00000000.1