GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea dispersa |
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Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea dispersa |
Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea dispersa; x__Pantoea dispersa EGD-AAK13 |
NCBI Strain Identifiers | EGD-AAK13 |
GTDB Type Material Designation | not type material |
GTDB Representative of Species | True (22 genomes in species cluster) |
CheckM Completeness | 99.98% |
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CheckM Contamination | 0.25% |
CheckM Strain Heterogeneity | 0.0 |
5S Count | 3 |
16S Count | 1 |
23S Count | 1 |
tRNA Count | 18 |
Contig Count | 39 |
N50 Contigs | 237,706 bp |
Longest Contig | 552,709 bp |
Scaffold Count | 39 |
N50 Scaffolds | 237,706 bp |
Longest Scaffold | 552,709 bp |
Genome Size | 4,764,584 bp |
Protein Count | 4,377 |
Coding Density | 88.29% |
GC Percentage | 57.81% |
Ambiguous Bases | N/A |
GTDB representative of species | True |
Assembly Level | Contig |
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Assembly Name | GS De Novo Assembly |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMN02469686 |
Country | India: MS |
Date | 2013-9-11 |
Genbank Assembly Accession | GCA_000465555.2 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | vegetable market soil |
Latitude Longitude | None |
Molecule Count | N/A |
CDS Count | 4,349 |
Refseq Category | representative genome |
Seq Rel Date | 2013/09/11 |
Spanned Gaps | 0 |
Species Taxid | 59814 |
SSU Count | 1 |
Submitter | National Environmental Engineering Research Institute-CSIR |
Taxid | 1358411 |
Total Gap Length | 0 |
Translation Table | 11 |
tRNA Count (total) | 66 |
Type Material | None |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | AVSS00000000.1 |