Undefined name (Failed Quality Check)
Isolate MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema pedis
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema pedis; x__Treponema pedis isoM1220
NCBI Strain Identifiers isoM1220
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.19%
CheckM Contamination 9.86%
CheckM Strain Heterogeneity 84.21
5S Count 2
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 761
N50 Contigs 13,199 bp
Longest Contig 54,992 bp
Scaffold Count 761
N50 Scaffolds 13,199 bp
Longest Scaffold 54,992 bp
Genome Size 3,101,343 bp
Protein Count 3,281
Coding Density 88.47%
GC Percentage 37.28%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Treponema pedis/isoM1220
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02379488
Country None
Date 2013-09-06
Genbank Assembly Accession GCA_000465055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gingiva
Latitude Longitude None
Molecule Count N/A
CDS Count 3,172
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 0
Species Taxid 409322
SSU Count 5
Submitter Swedish University of Agricultural Sciences
Taxid 1291002
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOTQ00000000.1