Planktothrix rubescens_A
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Phormidiaceae; g__Planktothrix; s__Planktothrix rubescens_A
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__Oscillatoriales; f__Microcoleaceae; g__Planktothrix; s__Planktothrix rubescens
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; x__Oscillatoriophycideae; o__Oscillatoriales; f__Microcoleaceae; g__Planktothrix; s__Planktothrix rubescens; x__Planktothrix rubescens NIVA-CYA 407
NCBI Strain Identifiers NIVA-CYA 407
GTDB Type Material Designation not type material
GTDB Representative of Species True (10 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 93
N50 Contigs 117,092 bp
Longest Contig 412,527 bp
Scaffold Count 5
N50 Scaffolds 3,157,393 bp
Longest Scaffold 3,157,393 bp
Genome Size 5,509,943 bp
Protein Count 4,847
Coding Density 84.29%
GC Percentage 39.46%
Ambiguous Bases 33
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name NC407_1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261512
Country Norway: Lake Steinsfjorden
Date 2013-09-06
Genbank Assembly Accession GCA_000464785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,798
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 89
Species Taxid 59512
SSU Count 1
Submitter University of Oslo
Taxid 1255374
Total Gap Length 107058
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVFW00000000.1