Planktothrix rubescens_A
Isolate HQ 5S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Phormidiaceae; g__Planktothrix; s__Planktothrix rubescens_A
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__Oscillatoriales; f__Microcoleaceae; g__Planktothrix; s__Planktothrix agardhii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; x__Oscillatoriophycideae; o__Oscillatoriales; f__Microcoleaceae; g__Planktothrix; s__Planktothrix agardhii; x__Planktothrix agardhii NIVA-CYA 34
NCBI Strain Identifiers NIVA-CYA 34
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000464785.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 1.31%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 19
Contig Count 218
N50 Contigs 50,924 bp
Longest Contig 168,167 bp
Scaffold Count 213
N50 Scaffolds 50,924 bp
Longest Scaffold 168,167 bp
Genome Size 5,516,447 bp
Protein Count 4,965
Coding Density 86.72%
GC Percentage 39.48%
Ambiguous Bases 1
GTDB representative GCA_000464785.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name NC34_1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02261500
Country Norway: Lake Kolbotnvatnet
Date 2013-09-06
Genbank Assembly Accession GCA_000464725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,929
Refseq Category na
Seq Rel Date 2013/09/06
Spanned Gaps 5
Species Taxid 1160
SSU Count 0
Submitter University of Oslo
Taxid 213631
Total Gap Length 1036
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVFT00000000.1