Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli Tx1686
NCBI Strain Identifiers Tx1686
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 33.33
5S Count 5
16S Count 7
23S Count 5
tRNA Count 18
Contig Count 125
N50 Contigs 127,108 bp
Longest Contig 481,558 bp
Scaffold Count 125
N50 Scaffolds 127,108 bp
Longest Scaffold 481,558 bp
Genome Size 5,228,457 bp
Protein Count 5,001
Coding Density 87.46%
GC Percentage 50.32%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM46288v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885534
Country USA: TX
Date 2013-8-29
Genbank Assembly Accession GCA_000462885.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,453
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter IGS
Taxid 1207037
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVSN00000000.1