Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 08BKT77219
NCBI Strain Identifiers 08BKT77219
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 7
tRNA Count 18
Contig Count 139
N50 Contigs 117,841 bp
Longest Contig 423,177 bp
Scaffold Count 139
N50 Scaffolds 117,841 bp
Longest Scaffold 423,177 bp
Genome Size 5,321,305 bp
Protein Count 5,121
Coding Density 87.44%
GC Percentage 50.19%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM46232v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01919667
Country Sweden
Date 2013-8-29
Genbank Assembly Accession GCA_000462325.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,571
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 1081895
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVRJ00000000.1