Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3955-1
NCBI Strain Identifiers UMEA 3955-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 8
tRNA Count 20
Contig Count 48
N50 Contigs 236,778 bp
Longest Contig 911,410 bp
Scaffold Count 16
N50 Scaffolds 655,652 bp
Longest Scaffold 1,812,997 bp
Genome Size 5,417,113 bp
Protein Count 5,055
Coding Density 86.70%
GC Percentage 50.60%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3955-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885988
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000461815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,250
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 32
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1281276
Total Gap Length 50782
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWEK00000000.1