Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3707-1
NCBI Strain Identifiers UMEA 3707-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 8
tRNA Count 20
Contig Count 43
N50 Contigs 308,504 bp
Longest Contig 440,601 bp
Scaffold Count 18
N50 Scaffolds 812,261 bp
Longest Scaffold 1,468,364 bp
Genome Size 5,253,182 bp
Protein Count 4,841
Coding Density 86.75%
GC Percentage 50.44%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3707-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885980
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000461655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,056
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 25
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1281268
Total Gap Length 39242
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWEC00000000.1