Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3687-1
NCBI Strain Identifiers UMEA 3687-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 98.48%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 6
tRNA Count 19
Contig Count 48
N50 Contigs 193,472 bp
Longest Contig 582,627 bp
Scaffold Count 13
N50 Scaffolds 1,940,517 bp
Longest Scaffold 2,025,122 bp
Genome Size 5,139,765 bp
Protein Count 4,801
Coding Density 87.44%
GC Percentage 50.58%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3687-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885974
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000461555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,985
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 35
Species Taxid 562
SSU Count 5
Submitter Broad Institute
Taxid 1281262
Total Gap Length 28424
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWDX00000000.1