Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3632-1
NCBI Strain Identifiers UMEA 3632-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.69%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 2
23S Count 4
tRNA Count 19
Contig Count 33
N50 Contigs 241,860 bp
Longest Contig 804,605 bp
Scaffold Count 8
N50 Scaffolds 3,648,694 bp
Longest Scaffold 3,648,694 bp
Genome Size 5,328,652 bp
Protein Count 4,977
Coding Density 87.10%
GC Percentage 50.64%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3632-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885968
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000461455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,424
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 25
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1281256
Total Gap Length 51760
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWDR00000000.1