Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3329-1
NCBI Strain Identifiers UMEA 3329-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 5
tRNA Count 18
Contig Count 37
N50 Contigs 327,482 bp
Longest Contig 598,630 bp
Scaffold Count 9
N50 Scaffolds 3,388,266 bp
Longest Scaffold 3,388,266 bp
Genome Size 4,992,563 bp
Protein Count 4,701
Coding Density 87.36%
GC Percentage 50.69%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3329-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885954
Country Sweden
Date 2013-8-29
Genbank Assembly Accession GCA_000461255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,068
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 28
Species Taxid 562
SSU Count 3
Submitter Broad Institute
Taxid 1281242
Total Gap Length 34225
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWDH00000000.1