Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3230-1
NCBI Strain Identifiers UMEA 3230-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 12
16S Count 10
23S Count 11
tRNA Count 20
Contig Count 43
N50 Contigs 312,010 bp
Longest Contig 832,730 bp
Scaffold Count 13
N50 Scaffolds 888,882 bp
Longest Scaffold 1,125,239 bp
Genome Size 5,205,739 bp
Protein Count 4,786
Coding Density 86.62%
GC Percentage 50.39%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3230-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885937
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000460975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,994
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 30
Species Taxid 562
SSU Count 10
Submitter Broad Institute
Taxid 1281225
Total Gap Length 21237
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWCT00000000.1