Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3155-1
NCBI Strain Identifiers UMEA 3155-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 5
tRNA Count 20
Contig Count 35
N50 Contigs 341,308 bp
Longest Contig 500,616 bp
Scaffold Count 10
N50 Scaffolds 1,551,773 bp
Longest Scaffold 1,566,713 bp
Genome Size 4,914,571 bp
Protein Count 4,561
Coding Density 87.65%
GC Percentage 50.70%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3155-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885908
Country Sweden
Date 2013-8-29
Genbank Assembly Accession GCA_000460395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,906
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 25
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1281196
Total Gap Length 37635
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWBQ00000000.1