Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3097-1
NCBI Strain Identifiers UMEA 3097-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 3.61%
CheckM Strain Heterogeneity 96.67
5S Count 6
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 31
N50 Contigs 326,513 bp
Longest Contig 615,802 bp
Scaffold Count 8
N50 Scaffolds 3,036,210 bp
Longest Scaffold 3,036,210 bp
Genome Size 5,230,753 bp
Protein Count 4,834
Coding Density 87.54%
GC Percentage 50.52%
Ambiguous Bases 1
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3097-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885894
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000460135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,029
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 23
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1281182
Total Gap Length 33935
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWBC00000000.1