Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli UMEA 3088-1
NCBI Strain Identifiers UMEA 3088-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 51
N50 Contigs 215,101 bp
Longest Contig 1,071,921 bp
Scaffold Count 7
N50 Scaffolds 1,344,362 bp
Longest Scaffold 2,258,017 bp
Genome Size 5,445,797 bp
Protein Count 5,063
Coding Density 86.38%
GC Percentage 50.44%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_UMEA_3088-1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885893
Country Sweden
Date 2013-08-29
Genbank Assembly Accession GCA_000460115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,270
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 44
Species Taxid 562
SSU Count 8
Submitter Broad Institute
Taxid 1281181
Total Gap Length 45522
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWBB00000000.1