Escherichia sp000208585
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia sp000208585
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KOEGE 71 (186a)
NCBI Strain Identifiers KOEGE 71 (186a)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000208585.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 24
N50 Contigs 851,263 bp
Longest Contig 934,739 bp
Scaffold Count 12
N50 Scaffolds 4,469,893 bp
Longest Scaffold 4,469,893 bp
Genome Size 4,576,107 bp
Protein Count 4,253
Coding Density 87.73%
GC Percentage 50.53%
Ambiguous Bases N/A
GTDB representative GCA_000208585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KOEGE_71_186a_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885880
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000459855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,540
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 12
Species Taxid 562
SSU Count 5
Submitter Broad Institute
Taxid 1281168
Total Gap Length 9372
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AWAO00000000.1