Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KOEGE 3 (4a)
NCBI Strain Identifiers KOEGE 3 (4a)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 4
23S Count 3
tRNA Count 19
Contig Count 57
N50 Contigs 210,092 bp
Longest Contig 380,939 bp
Scaffold Count 13
N50 Scaffolds 1,461,005 bp
Longest Scaffold 2,182,963 bp
Genome Size 4,645,415 bp
Protein Count 4,246
Coding Density 86.20%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KOEGE_3_4a_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885865
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000459555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,601
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 44
Species Taxid 562
SSU Count 1
Submitter Broad Institute
Taxid 1281153
Total Gap Length 93084
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVZZ00000000.1