Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli HVH 217 (4-1022806)
NCBI Strain Identifiers HVH 217 (4-1022806)
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 2
23S Count 5
tRNA Count 19
Contig Count 43
N50 Contigs 223,526 bp
Longest Contig 738,725 bp
Scaffold Count 17
N50 Scaffolds 1,065,695 bp
Longest Scaffold 1,168,277 bp
Genome Size 5,265,536 bp
Protein Count 5,031
Coding Density 87.23%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_HVH_217_4-1022806_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01885856
Country Denmark
Date 2013-8-29
Genbank Assembly Accession GCA_000459375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,422
Refseq Category na
Seq Rel Date 2013/08/29
Spanned Gaps 26
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1281144
Total Gap Length 46712
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AVZQ00000000.1